PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569151.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 421aa    MW: 46454.6 Da    PI: 8.1222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-113157127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_012569151.1 31 PGEPDCSYYIRTGLCRFGATCRFNHPP 57
                    5789*********************97 PP

2zf-CCCH39.87.6e-1377102227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++C+F+H++
  XP_012569151.1  77 GQPECQYYLKTGTCKFGATCRFHHPK 102
                     5799********************96 PP

3zf-CCCH31.14.1e-10124148327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+ ++CkF+H++
  XP_012569151.1 124 ESECAYYLRTGQCKFANTCKFHHPQ 148
                     679********************97 PP

4zf-CCCH38.61.8e-12283308227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ C+F+H++
  XP_012569151.1 283 DQPECQFYMKTGDCKFGAVCRFHHPR 308
                     689*********************96 PP

5zf-CCCH38.12.5e-12328354127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_012569151.1 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763158IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-83257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-43656IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-675102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.48875103IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-1078102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-679104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-481101IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582121149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5122149IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7124148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624281309IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5281308IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5284309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4287309IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821327355IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5330354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4332352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEFDSIPQDA MWQMNLSSSQ TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK  60
LAIATARMKG EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL  120
RPNESECAYY LRTGQCKFAN TCKFHHPQPS NMVLSMRGSP VYPTVQSPTT PGQQSYXXXX  180
XXXTNWSSSS YIPSPRWQGP SSYAPLILPQ GVVSVPGWST YNGQMGSDSP QQTMGNDQTY  240
GTSRQGEPEN AGLQGAYPQF RSGSVPLGFY ALQRENIFPE RPDQPECQFY MKTGDCKFGA  300
VCRFHHPRER KIPAPDCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGIFTYN  360
VSTSPLADAP GRRLLGSSSG PAALSLSSEG LVESGSAKPR RLSLSETRQI PSGDDNIDDE  420
G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569151.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLG7KRG60.0G7KRG6_MEDTR; Uncharacterized protein
STRINGGLYMA09G38650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-178zinc finger protein 1